Lieberman Aiden, Erez: search on Z-Library

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1

Using deep learning and Google Street View to estimate the demographic makeup of neighborhoods across the United States

Gebru, Timnit, Krause, Jonathan, Wang, Yilun, Chen, Duyun, Deng, Jia, Aiden, Erez Lieberman, Fei-Fei, Li

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.21 MB

english, 2017

2

Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation

Senigl, Filip, Maman, Yaakov, Dinesh, Ravi K., Alinikula, Jukka, Seth, Rashu B., Pecnova, Lubomira, Omer, Arina D., Rao, Suhas S.P., Weisz, David, Buerstedde, Jean-Marie, Aiden, Erez Lieberman, Casell

Journal:

Year:

2019

File:

PDF, 4.51 MB

2019

3

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

Rao, Suhas S.P., Huntley, Miriam H., Durand, Neva C., Stamenova, Elena K., Bochkov, Ivan D., Robinson, James T., Sanborn, Adrian L., Machol, Ido, Omer, Arina D., Lander, Eric S., Aiden, Erez Lieberman

Journal:

Year:

2014

Language:

english

File:

PDF, 5.60 MB

english, 2014

4

Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.

van Berkum, Nynke L., Lieberman-Aiden, Erez, Williams, Louise, Imakaev, Maxim, Gnirke, Andreas, Mirny, Leonid A., Dekker, Job, Lander, Eric S.

Journal:

Journal of Visualized Experiments

Year:

2010

Language:

english

File:

PDF, 415 KB

english, 2010

5

Somatic Rearrangement in B Cells: It’s (Mostly) Nuclear Physics

Aiden, Erez Lieberman, Casellas, Rafael

Journal:

Year:

2015

Language:

english

File:

PDF, 724 KB

english, 2015

6

The expanding scope of DNA sequencing

Shendure, Jay, Aiden, Erez Lieberman

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 1.05 MB

english, 2012

7

A Postural Assessment Utilizing Machine Learning Prospectively Identifies Older Adults at a High Risk of Falling

Forth, Katharine E., Wirfel, Kelly L., Adams, Sasha D., Rianon, Nahid J., Lieberman Aiden, Erez, Madansingh, Stefan I.

Journal:

Frontiers in Medicine

Year:

2020

File:

PDF, 1.54 MB

2020

8

Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map

Eagen, Kyle P., Aiden, Erez Lieberman, Kornberg, Roger D.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.98 MB

english, 2017

9

De Novo Prediction of Human Chromosome Structures: Epigenetic Marking Patterns Encode Genome Architecture

Di Pierro, Michele, Cheng, Ryan R., Lieberman Aiden, Erez, Wolynes, Peter G., Onuchic, Jose N.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 43 KB

english, 2018

10

De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture

Di Pierro, Michele, Cheng, Ryan R., Lieberman Aiden, Erez, Wolynes, Peter G., Onuchic, José N.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 3.29 MB

english, 2017

11

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

Dudchenko, Olga, Batra, Sanjit S., Omer, Arina D., Nyquist, Sarah K., Hoeger, Marie, Durand, Neva C., Shamim, Muhammad S., Machol, Ido, Lander, Eric S., Aiden, Aviva Presser, Aiden, Erez Lieberman

Journal:

Year:

2017

Language:

english

File:

PDF, 1.28 MB

english, 2017

12

Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data

Robinson, James T., Turner, Douglass, Durand, Neva C., Thorvaldsdóttir, Helga, Mesirov, Jill P., Aiden, Erez Lieberman

Journal:

Year:

2018

Language:

english

File:

PDF, 1.22 MB

english, 2018

13

Chromatin Is Frequently Unknotted at the Megabase Scale

Goundaroulis, Dimos, Lieberman Aiden, Erez, Stasiak, Andrzej

Journal:

Biophysical Journal

Year:

2019

File:

PDF, 2.30 MB

2019

14

Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals

Rowley, M Jordan, Poulet, Axel, Nichols, Michael, Bixler, Brianna, Sanborn, Adrian, Brouhard, Elizabeth, Hermetz, Karen, Linsenbaum, Hannah, Csankovszki, Gyorgyi, Lieberman Aiden, Erez, Corces, Victor

Journal:

Genome Research

Year:

2020

File:

PDF, 1.77 MB

2020

15

GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data

Oluwadare, Oluwatosin, Highsmith, Max, Turner, Douglass, Lieberman Aiden, Erez, Cheng, Jianlin

Journal:

BMC Molecular and Cell Biology

Year:

2020

File:

PDF, 2.89 MB

2020

16

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

Rao, Suhas S.P., Huntley, Miriam H., Durand, Neva C., Stamenova, Elena K., Bochkov, Ivan D., Robinson, James T., Sanborn, Adrian L., Machol, Ido, Omer, Arina D., Lander, Eric S., Aiden, Erez Lieberman

Journal:

Year:

2015

Language:

english

File:

PDF, 467 KB

english, 2015

17

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

Durand, Neva C., Robinson, James T., Shamim, Muhammad S., Machol, Ido, Mesirov, Jill P., Lander, Eric S., Aiden, Erez Lieberman

Journal:

Year:

2016

Language:

english

File:

PDF, 1.55 MB

english, 2016

18

Chromosomalâlevel genome assembly of the scimitarâhorned oryx: insights into diversity and demography of a species extinct in the wild

Humble, Emily, Dobrynin, Pavel, Senn, Helen, Chuven, Justin, Scott, Alan F., Mohr, David W., Dudchenko, Olga, Omer, Arina D., Colaric, Zane, Aiden, Erez Lieberman, Salem Al Dhaheri, Shaikha, Wildt, Da

Journal:

Molecular Ecology Resources

Year:

2020

File:

PDF, 15.00 MB

2020

19

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Durand, Neva C., Shamim, Muhammad S., Machol, Ido, Rao, Suhas S.P., Huntley, Miriam H., Lander, Eric S., Aiden, Erez Lieberman

Journal:

Year:

2016

Language:

english

File:

PDF, 1.17 MB

english, 2016

20

Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development

Phanstiel, Douglas H., Van Bortle, Kevin, Spacek, Damek, Hess, Gaelen T., Shamim, Muhammad Saad, Machol, Ido, Love, Michael I., Aiden, Erez Lieberman, Bassik, Michael C., Snyder, Michael P.

Journal:

Year:

2017

Language:

english

File:

PDF, 5.02 MB

english, 2017

21

The fundamental role of chromatin loop extrusion in physiological V(D)J recombination

Zhang, Yu, Zhang, Xuefei, Ba, Zhaoqing, Liang, Zhuoyi, Dring, Edward W., Hu, Hongli, Lou, Jiangman, Kyritsis, Nia, Zurita, Jeffrey, Shamim, Muhammad S., Presser Aiden, Aviva, Lieberman Aiden, Erez, Al

Journal:

Year:

2019

File:

PDF, 20.36 MB

2019

22

Correction to: GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data

Oluwadare, Oluwatosin, Highsmith, Max, Turner, Douglass, Lieberman Aiden, Erez, Cheng, Jianlin

Journal:

BMC Molecular and Cell Biology

Year:

2020

File:

PDF, 243 KB

2020

23

Transferable model for chromosome architecture

Di Pierro, Michele, Zhang, Bin, Aiden, Erez Lieberman, Wolynes, Peter G., Onuchic, José N.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.75 MB

english, 2016

24

The fundamental role of chromatin loop extrusion in physiological V(D)J recombination

Zhang, Yu, Zhang, Xuefei, Ba, Zhaoqing, Liang, Zhuoyi, Dring, Edward W., Hu, Hongli, Lou, Jiangman, Kyritsis, Nia, Zurita, Jeffrey, Shamim, Muhammad S., Presser Aiden, Aviva, Lieberman Aiden, Erez, Al

Journal:

Year:

2019

Language:

english

File:

PDF, 20.36 MB

english, 2019

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